Preserving grape genetic diversity in the face of climate change and disease threats
In the heart of a modern gene bank, temperatures hover around -196° Celsius, preserving the genetic essence of grapes that may one day save the world's wine industry from extinction.
Imagine a world where your favorite wine is no longer available—where the unique flavors of centuries-old grape varieties have vanished forever. This isn't merely science fiction; as climate change transforms agricultural landscapes and diseases threaten vineyards worldwide, this scenario becomes increasingly plausible. The genetic diversity that has sustained viticulture for millennia is now under threat, with many ancient grape varieties disappearing at an alarming rate.
Enter the unsung heroes of agricultural conservation: gene banks, the biological libraries safeguarding plant genetic resources for future generations. For grapevines, these repositories represent nothing less than an insurance policy for global viticulture, preserving not just the grapes we know and love, but the wild relatives and forgotten varieties that may hold the key to developing climate-resilient vines of tomorrow 1 . This is the story of how scientists are racing against time to preserve grape genetic heritage, using everything from frosty freezers to digital databases to ensure that the wines we enjoy today will survive the challenges of an uncertain future.
Vineyards face increasing threats from climate change and disease
At its core, a gene bank is a repository that stores genetic material—seeds, pollen, tissues, and even DNA—for long-term conservation and use 1 . Think of it as a combination of a library, an archive, and a safety deposit box for biological information. These institutions systematically collect, preserve, and document genetic resources, making them available for research and breeding programs.
For grapevines, conservation takes multiple forms:
The VIVC (Vitis International Variety Catalogue), for instance, documents over 1,200 grape varieties from Turkey alone, showcasing the staggering genetic wealth that researchers are working to preserve 5 .
| Method | Materials Preserved |
|---|---|
| In-vitro Storage | Plant cells, meristems, tissue samples |
| Cryogenic Storage | Seeds, pollen, dormant buds, shoot tips |
| Field Gene Banks | Entire grapevine plants |
| DNA Storage | Isolated DNA molecules |
Modern gene banks employ sophisticated conservation methods tailored to different plant characteristics. For grapes, which typically produce recalcitrant seeds that cannot survive traditional drying and freezing, biotechnological solutions are essential 1 .
The goal is not merely passive storage but active utilization. As one research paper notes, "The major goals of managing gene banks are to ease the use of genetic resources and conserve and protect genetic variety" 1 . These preserved resources become invaluable for scientists developing new grape varieties resistant to emerging diseases, drought, or extreme temperatures.
With over 30,000 genes in the grape genome, simply preserving genetic material is not enough—scientists need to understand what each gene does and how it contributes to important traits 2 . This challenge led researchers from the INTEGRAPE COST Action to develop the first grape reference gene catalogue, a standardized collection where genes are linked to their functions 2 .
Imagine trying to find a specific book in a massive library without a catalog system—that was the predicament facing grape geneticists before this initiative. The catalogue serves as a centralized resource where researchers can look up grape genes and find their likely functions, with information spanning different versions of genome annotations to connect past and present research 2 .
Genes in the grape genome
Characterized genes in the catalogue
What makes this catalogue particularly innovative is its 6-tier validation level system, which ranks the certainty of gene function assignments based on available evidence 2 :
Based mainly on similarity to other proteins
Family-level characterization with some expression data
Gene co-expression networks or correlation to metabolites
Association with specific quantitative trait loci
Transgenesis in other plant species
Experimental confirmation in grapevines or biochemical testing
This hierarchy helps researchers distinguish between preliminary hypotheses and well-established gene functions, preventing the propagation of erroneous information in scientific literature. The catalogue already contains over 2,000 characterized genes, including 581 enzymes classified into metabolic pathways and 880 transcription factors 2 .
Perhaps most importantly, the catalogue is designed for community curation, allowing grape researchers worldwide to contribute new findings through an online submission form, creating a living resource that improves as knowledge grows 2 .
To understand how modern genetic tools are being applied to protect grape diversity and authenticity, let's examine a revealing experiment conducted by Italian researchers focused on the Prosecco wine production chain 3 .
Prosecco wine regulations stipulate that the "Glera" grape variety must constitute at least 85% of the blend, with other local and international varieties permitted in smaller quantities 3 . Without reliable verification methods, however, intentional or accidental misrepresentation can occur, compromising wine authenticity and consumer trust. Researchers aimed to develop a molecular toolbox capable of tracking grape varieties from nursery to finished must (crushed grape juice) 3 .
Prosecco wine authenticity relies on genetic verification of grape varieties
The research team developed two complementary techniques using Single Nucleotide Polymorphisms (SNPs)—tiny variations in DNA sequences that can serve as unique genetic markers:
Using the BioMark platform, which employs microfluidic chips to analyze multiple genetic markers simultaneously across many samples 3 .
For precise varietal quantification, where samples are partitioned into thousands of individual reactions for ultrasensitive detection 3 .
The researchers assembled 24 "Glera" accessions from traditional growing areas, along with 136 other grapevine varieties for comparison. They then identified unique SNP markers that could reliably distinguish "Glera" from other varieties 3 .
| Sample Type | Number |
|---|---|
| "Glera" accessions | 24 |
| Other grape varieties | 136 |
| Commercial wines | 3 |
| Aspect | Finding |
|---|---|
| Authentication | SNP markers reliably identified Glera variety |
| Quantification | Digital PCR accurately measured varietal percentages |
| Chain Tracking | Methods effective from nursery to must |
| Wine Testing | Limited success with aged commercial wines |
The research team successfully identified a set of SNP markers that could reliably authenticate "Glera" grapes and products. The high-throughput system efficiently distinguished "Glera" from other varieties, while the digital PCR method provided accurate quantification of the varietal composition in blends 3 .
This experiment demonstrates how genetic tools derived from gene bank collections can have direct practical applications for industry regulation and consumer protection. As the authors note, "The grape plant is therefore the starting point of wine authenticity, both in terms of the grape variety used and of the plant cultivation area" 3 .
The groundbreaking work of grape conservation and characterization relies on a sophisticated array of biological and digital resources. Here are some key tools enabling this research:
Genetic fingerprinting and diversity assessment using SSR, SNP, ISSR, RAPD markers.
Long-term storage of plant tissues using liquid nitrogen and cryoprotectants.
Isolation of high-quality genetic material with kits optimized for grape tissues.
Maintenance of sterile plant cultures with nutrient formulations and growth regulators.
Data analysis and gene function annotation using GRAPEDIA, GEDG, Vitis Visualization (VitViz).
Gene expression profiling under various conditions using the Gene Expression Database of Grape (GEDG) .
Among digital resources, the Gene Expression Database of Grape (GEDG) stands out as a comprehensive platform integrating transcriptome data from 32 stress datasets and 20 growth/development datasets . This freely accessible resource helps researchers understand how grape genes respond to various environmental challenges—critical knowledge for developing more resilient varieties.
Similarly, GRAPEDIA aims to create "a single open access platform, allowing data exploration and visualization of all grapevine genetic, omics and phenotyping resources" 6 . Such integrated platforms are essential for maximizing the research potential of preserved genetic material.
Gene banks represent far more than frozen libraries of genetic material—they are active, dynamic resources that hold solutions to challenges we are only beginning to face. For grapevines, whose cultivation spans millennia and cultures, preserving genetic diversity is not merely about saving heirloom varieties but about ensuring the future resilience of a global industry facing unprecedented environmental changes.
The work of conservation is increasingly urgent. As one study warns, "Due to human activity and climate change, biodiversity has dramatically decreased in recent decades when compared to earlier ages" 1 . The genetic resources we preserve today may contain the key traits needed for the viticulture of tomorrow—whether it's disease resistance from wild grape relatives, drought tolerance from arid-adapted varieties, or quality characteristics that consumers cherish.
The next time you enjoy a glass of wine, consider the immense genetic heritage in your glass—and the scientific efforts underway to ensure that future generations will be able to experience the same diversity of flavors and traditions. Through the combined efforts of gene banks, researchers, and conservation-minded viticulturists, we raise a glass to the future of this remarkable fruit.
Preserving genetic diversity ensures the future of wine culture